bicameral::sim::anonymous_namespace{reaction_table.cpp} Namespace Reference

Classes
struct	TermsResult

Typedefs
using	NameIndex = std::map<std::string, uint32_t, std::less<>>

Functions
uint64_t	HashName (std::string_view name)
ReactionTableDefinition	CanonicalOrder (const ReactionTableDefinition &definition)
std::expected< NameIndex, std::string >	IndexElements (const ReactionTableDefinition &definition, BakedReactionTable &baked)
int64_t	ZeroKelvinEnthalpy (const SpeciesDefinition &species)
std::expected< void, std::string >	BakeSpecies (const SpeciesDefinition &definition, const NameIndex &elements, const ReactionTableDefinition &table, BakedReactionTable &baked)
std::expected< NameIndex, std::string >	BakeAllSpecies (const ReactionTableDefinition &definition, const NameIndex &elements, BakedReactionTable &baked)
std::expected< TermsResult, std::string >	CopyTerms (const RuleDefinition &rule, std::span< const RuleTerm > terms, const NameIndex &species, std::span< uint32_t > ids, std::span< uint32_t > coefficients)
std::expected< void, std::string >	CheckElementBalance (const RuleDefinition &definition, const RxRule &rule, const BakedReactionTable &baked)
int64_t	ReactionEnthalpy (const RxRule &rule, const BakedReactionTable &baked)
std::expected< RxRule, std::string >	BakeRule (const RuleDefinition &definition, const NameIndex &species, const BakedReactionTable &baked)
std::optional< std::string >	CheckDeclaredEnthalpy (const RuleDefinition &rule, const ReactionTableDefinition &definition, const NameIndex &species)
std::expected< uint64_t, std::string >	BakeRate (const RuleDefinition &definition, int64_t lnConstantPart, uint32_t kelvin)
std::expected< void, std::string >	BakeRates (const RuleDefinition &definition, const RxRule &rule, BakedReactionTable &baked)
void	BuildRuleIndex (BakedReactionTable &baked)
template<typename Cell>
Cell	FillReactionCell (const BakedReactionTable &table, Cell cell, std::span< const SpeciesAmount > amounts, int32_t temperatureMilliKelvin)
template<typename Cell>
std::vector< uint64_t >	CountCellElements (const BakedReactionTable &table, const Cell &cell)
template<typename Cell>
uint64_t	HashCell (const Cell &cell)

Variables
constexpr uint64_t	GAS_CONSTANT_NANOJOULES = 8314462618
constexpr uint64_t	NANOJOULES_PER_JOULE = 1000000000
constexpr uint64_t	MICROJOULES_PER_JOULE = 1000000
constexpr int64_t	STANDARD_TEMPERATURE_MILLIKELVIN = 298150
constexpr int32_t	RATE_EXPONENT_MIN = -4096
constexpr int32_t	RATE_EXPONENT_MAX = 4096
constexpr int64_t	CELL_VOLUME_LOG2 = -3
constexpr uint64_t	FNV_OFFSET = 0xcbf29ce484222325ULL
constexpr uint64_t	FNV_PRIME = 0x100000001b3ULL
constexpr int64_t	DECLARED_ENTHALPY_TOLERANCE_JOULES = 1000

Typedef Documentation

NameIndex

using bicameral::sim::anonymous_namespace{reaction_table.cpp}::NameIndex = std::map<std::string, uint32_t, std::less<>>

Definition at line 36 of file reaction_table.cpp.

Function Documentation

BakeAllSpecies()

std::expected< NameIndex, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::BakeAllSpecies	(	const ReactionTableDefinition &	definition,
		const NameIndex &	elements,
		BakedReactionTable &	baked )

Definition at line 122 of file reaction_table.cpp.

References BakeAllSpecies(), BakeSpecies(), bicameral::sim::BakedReactionTable::molarMasses, bicameral::sim::SpeciesDefinition::name, bicameral::sim::BakedReactionTable::species, bicameral::sim::ReactionTableDefinition::species, bicameral::sim::BakedReactionTable::speciesElements, and bicameral::sim::BakedReactionTable::speciesNames.

Referenced by BakeAllSpecies().

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BakeRate()

std::expected< uint64_t, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::BakeRate	(	const RuleDefinition &	definition,
		int64_t	lnConstantPart,
		uint32_t	kelvin )

Definition at line 282 of file reaction_table.cpp.

References bicameral::sim::ArrheniusRate::activationEnergy, BakeRate(), GAS_CONSTANT_NANOJOULES, bicameral::sim::RuleDefinition::name, NANOJOULES_PER_JOULE, bicameral::sim::RuleDefinition::rate, RATE_EXPONENT_MAX, and RATE_EXPONENT_MIN.

Referenced by BakeRate(), and BakeRates().

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BakeRates()

std::expected< void, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::BakeRates	(	const RuleDefinition &	definition,
		const RxRule &	rule,
		BakedReactionTable &	baked )

Definition at line 309 of file reaction_table.cpp.

References bicameral::sim::ArrheniusRate::activationEnergy, BakeRate(), BakeRates(), CELL_VOLUME_LOG2, bicameral::sim::RuleDefinition::name, bicameral::sim::ArrheniusRate::preExponentialExponent10, bicameral::sim::ArrheniusRate::preExponentialMantissa, bicameral::sim::RuleDefinition::rate, and bicameral::sim::BakedReactionTable::rates.

Referenced by BakeRates().

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BakeRule()

std::expected< RxRule, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::BakeRule	(	const RuleDefinition &	definition,
		const NameIndex &	species,
		const BakedReactionTable &	baked )

Definition at line 217 of file reaction_table.cpp.

References BakeRule(), CheckElementBalance(), CopyTerms(), HashName(), bicameral::sim::RuleDefinition::name, bicameral::sim::RuleDefinition::products, bicameral::sim::RuleDefinition::reactants, and ReactionEnthalpy().

Referenced by BakeRule().

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BakeSpecies()

std::expected< void, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::BakeSpecies	(	const SpeciesDefinition &	definition,
		const NameIndex &	elements,
		const ReactionTableDefinition &	table,
		BakedReactionTable &	baked )

Definition at line 93 of file reaction_table.cpp.

References BakeSpecies(), bicameral::sim::SpeciesDefinition::composition, bicameral::sim::ElementCount::count, bicameral::sim::ElementCount::element, bicameral::sim::ReactionTableDefinition::elements, bicameral::sim::SpeciesDefinition::heatCapacity, bicameral::sim::BakedReactionTable::molarMasses, bicameral::sim::SpeciesDefinition::name, bicameral::sim::BakedReactionTable::species, bicameral::sim::BakedReactionTable::speciesElements, bicameral::sim::BakedReactionTable::speciesNames, bicameral::sim::SpeciesDefinition::thermalConductivity, and ZeroKelvinEnthalpy().

Referenced by BakeAllSpecies(), and BakeSpecies().

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BuildRuleIndex()

void bicameral::sim::anonymous_namespace{reaction_table.cpp}::BuildRuleIndex

(

BakedReactionTable &

baked

)

Definition at line 345 of file reaction_table.cpp.

References BuildRuleIndex(), bicameral::sim::BakedReactionTable::ruleIndex, bicameral::sim::BakedReactionTable::rules, and bicameral::sim::BakedReactionTable::species.

Referenced by BuildRuleIndex().

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CanonicalOrder()

ReactionTableDefinition bicameral::sim::anonymous_namespace{reaction_table.cpp}::CanonicalOrder

(

const ReactionTableDefinition &

definition

)

Definition at line 52 of file reaction_table.cpp.

References CanonicalOrder(), bicameral::sim::ReactionTableDefinition::elements, bicameral::sim::RuleDefinition::products, bicameral::sim::RuleDefinition::reactants, bicameral::sim::ReactionTableDefinition::rules, bicameral::sim::ReactionTableDefinition::species, and bicameral::sim::RuleTerm::species.

Referenced by CanonicalOrder().

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CheckDeclaredEnthalpy()

std::optional< std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::CheckDeclaredEnthalpy	(	const RuleDefinition &	rule,
		const ReactionTableDefinition &	definition,
		const NameIndex &	species )

Definition at line 248 of file reaction_table.cpp.

References CheckDeclaredEnthalpy(), DECLARED_ENTHALPY_TOLERANCE_JOULES, bicameral::sim::RuleDefinition::declaredReactionEnthalpy, bicameral::sim::SpeciesDefinition::formationEnthalpy, bicameral::sim::RuleDefinition::name, bicameral::sim::RuleDefinition::products, bicameral::sim::RuleDefinition::reactants, and bicameral::sim::ReactionTableDefinition::species.

Referenced by CheckDeclaredEnthalpy().

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CheckElementBalance()

std::expected< void, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::CheckElementBalance	(	const RuleDefinition &	definition,
		const RxRule &	rule,
		const BakedReactionTable &	baked )

Definition at line 181 of file reaction_table.cpp.

References CheckElementBalance(), bicameral::sim::BakedReactionTable::elementNames, bicameral::sim::RuleDefinition::name, and bicameral::sim::BakedReactionTable::speciesElements.

Referenced by BakeRule(), and CheckElementBalance().

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CopyTerms()

std::expected< TermsResult, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::CopyTerms	(	const RuleDefinition &	rule,
		std::span< const RuleTerm >	terms,
		const NameIndex &	species,
		std::span< uint32_t >	ids,
		std::span< uint32_t >	coefficients )

Definition at line 151 of file reaction_table.cpp.

References CopyTerms(), bicameral::sim::anonymous_namespace{reaction_table.cpp}::TermsResult::count, bicameral::sim::anonymous_namespace{reaction_table.cpp}::TermsResult::firstOrderMask, and bicameral::sim::RuleDefinition::name.

Referenced by BakeRule(), and CopyTerms().

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CountCellElements()

template<typename Cell>

std::vector< uint64_t > bicameral::sim::anonymous_namespace{reaction_table.cpp}::CountCellElements	(	const BakedReactionTable &	table,
		const Cell &	cell )

Definition at line 434 of file reaction_table.cpp.

References CountCellElements(), bicameral::sim::BakedReactionTable::elementNames, and bicameral::sim::BakedReactionTable::speciesElements.

Referenced by CountCellElements().

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FillReactionCell()

template<typename Cell>

Cell bicameral::sim::anonymous_namespace{reaction_table.cpp}::FillReactionCell	(	const BakedReactionTable &	table,
		Cell	cell,
		std::span< const SpeciesAmount >	amounts,
		int32_t	temperatureMilliKelvin )

Definition at line 414 of file reaction_table.cpp.

References FillReactionCell(), and bicameral::sim::BakedReactionTable::View().

Referenced by FillReactionCell().

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HashCell()

template<typename Cell>

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::HashCell

(

const Cell &

cell

)

Definition at line 448 of file reaction_table.cpp.

References HashCell().

Referenced by HashCell().

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HashName()

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::HashName

(

std::string_view

name

)

Definition at line 38 of file reaction_table.cpp.

References FNV_OFFSET, FNV_PRIME, and HashName().

Referenced by BakeRule(), and HashName().

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IndexElements()

std::expected< NameIndex, std::string > bicameral::sim::anonymous_namespace{reaction_table.cpp}::IndexElements	(	const ReactionTableDefinition &	definition,
		BakedReactionTable &	baked )

Definition at line 71 of file reaction_table.cpp.

References bicameral::sim::BakedReactionTable::elementNames, bicameral::sim::ReactionTableDefinition::elements, IndexElements(), and bicameral::sim::ElementDefinition::name.

Referenced by IndexElements().

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ReactionEnthalpy()

int64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::ReactionEnthalpy	(	const RxRule &	rule,
		const BakedReactionTable &	baked )

Definition at line 206 of file reaction_table.cpp.

References ReactionEnthalpy(), and bicameral::sim::BakedReactionTable::species.

Referenced by BakeRule(), and ReactionEnthalpy().

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ZeroKelvinEnthalpy()

int64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::ZeroKelvinEnthalpy

(

const SpeciesDefinition &

species

)

Definition at line 85 of file reaction_table.cpp.

References bicameral::sim::SpeciesDefinition::formationEnthalpy, bicameral::sim::SpeciesDefinition::heatCapacity, MICROJOULES_PER_JOULE, STANDARD_TEMPERATURE_MILLIKELVIN, and ZeroKelvinEnthalpy().

Referenced by BakeSpecies(), and ZeroKelvinEnthalpy().

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Variable Documentation

CELL_VOLUME_LOG2

int64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::CELL_VOLUME_LOG2 = -3

constexpr

Definition at line 30 of file reaction_table.cpp.

Referenced by BakeRates().

DECLARED_ENTHALPY_TOLERANCE_JOULES

int64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::DECLARED_ENTHALPY_TOLERANCE_JOULES = 1000

constexpr

Definition at line 34 of file reaction_table.cpp.

Referenced by CheckDeclaredEnthalpy().

FNV_OFFSET

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::FNV_OFFSET = 0xcbf29ce484222325ULL

constexpr

Definition at line 31 of file reaction_table.cpp.

Referenced by HashName().

FNV_PRIME

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::FNV_PRIME = 0x100000001b3ULL

constexpr

Definition at line 32 of file reaction_table.cpp.

Referenced by HashName().

GAS_CONSTANT_NANOJOULES

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::GAS_CONSTANT_NANOJOULES = 8314462618

constexpr

Definition at line 21 of file reaction_table.cpp.

Referenced by BakeRate().

MICROJOULES_PER_JOULE

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::MICROJOULES_PER_JOULE = 1000000

constexpr

Definition at line 23 of file reaction_table.cpp.

Referenced by ZeroKelvinEnthalpy().

NANOJOULES_PER_JOULE

uint64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::NANOJOULES_PER_JOULE = 1000000000

constexpr

Definition at line 22 of file reaction_table.cpp.

Referenced by BakeRate().

RATE_EXPONENT_MAX

int32_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::RATE_EXPONENT_MAX = 4096

constexpr

Definition at line 28 of file reaction_table.cpp.

Referenced by BakeRate().

RATE_EXPONENT_MIN

int32_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::RATE_EXPONENT_MIN = -4096

constexpr

Definition at line 27 of file reaction_table.cpp.

Referenced by BakeRate().

STANDARD_TEMPERATURE_MILLIKELVIN

int64_t bicameral::sim::anonymous_namespace{reaction_table.cpp}::STANDARD_TEMPERATURE_MILLIKELVIN = 298150

constexpr

Definition at line 25 of file reaction_table.cpp.

Referenced by ZeroKelvinEnthalpy().